Please note: The FAQ pages at the HPCVL website are continuously being revised. Some pages might pertain to an older configuration of the system. Please let us know if you encounter problems or inaccuracies, and we will correct the entries.
This is a "Frequently Asked Questions" file on using the molecular-dynamics program suite "Amber" on the SunFire 6800 cluster. These programs are suitable to carry out molecular dynamics simulations on large molecules, especially biomolecules.
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